getCommonAncestor {PhyloProfile} | R Documentation |
Identify the common ancestor for a selected taxa and return a list of all taxa that have that common ancestor from an large input taxa set.
getCommonAncestor(inputTaxa = NULL, inGroup = NULL)
inputTaxa |
ID list of all input taxa (e.g. "ncbi12345") |
inGroup |
ID list of selected taxa used for identify the common ancestor (e.g.: "ncbi55555") |
A list containing the taxonomy rank and name of the common ancestor, together with a dataframe storing the full taxonomy info of all taxa that share that corresponding common ancestor.
Vinh Tran (tran@bio.uni-frankfurt.de)
inputTaxa <- c("ncbi34740", "ncbi9606", "ncbi374847", "ncbi123851", "ncbi5664", "ncbi189518", "ncbi418459", "ncbi10116", "ncbi284812", "ncbi35128", "ncbi7070") inGroup <- c("ncbi9606", "ncbi10116") getCommonAncestor(inputTaxa, inGroup)