getDendrogram {PhyloProfile} | R Documentation |
Plot dendrogram tree
getDendrogram(dd = NULL)
dd |
dendrogram object (see ?clusterDataDend) |
A dendrogram plot for the genes in the input phylogenetic profiles.
Vinh Tran tran@bio.uni-frankfurt.de
data("finalProcessedProfile", package="PhyloProfile") data <- finalProcessedProfile profileType <- "binary" profiles <- getDataClustering( data, profileType, var1AggregateBy, var2AggregateBy) distMethod <- "mutualInformation" distanceMatrix <- getDistanceMatrix(profiles, distMethod) clusterMethod <- "complete" dd <- clusterDataDend(distanceMatrix, clusterMethod) getDendrogram(dd)