NP_Order {PERFect} | R Documentation |
Taxa importance ordering by the number of occurrences of the taxa in the n samples
NP_Order(Counts)
Counts |
OTU COUNTS table, where taxa are columns and samples are rows of the table. It should be a in data frame format with columns corresponding to taxa names. |
NP Taxa names in increasing order of the number of samples taxa are present in.
Ekaterina Smirnova
Smirnova, E., Huzurbazar, H., Jafari, F. “PERFect: permutation filtration of microbiome data", to be submitted.
data(mock2) # Proportion data matrix Prop <- mock2$Prop # Counts data matrix Counts <- mock2$Counts #arrange counts in order of increasing number of samples taxa are present in NP <- NP_Order(Counts)