plot_pathways {PAST}R Documentation

Plot Rugplots for Selected Pathways

Description

Plot Rugplots for Selected Pathways

Usage

plot_pathways(
  rugplots_data,
  filter_type,
  filter_parameter,
  mode,
  output_directory
)

Arguments

rugplots_data

The data to be plotted (returned from find_pathway_significance())

filter_type

The parameter to be used for filtering

filter_parameter

The cut-off value of the filtering parameter

mode

The mode used to create the data (increasing/decreasing)

output_directory

An existing directory to save results in

Value

Does not return a value

Examples

example("find_pathway_significance")
plot_pathways(rugplots_data, "pvalue", "0.03", "decreasing", tempdir())

[Package PAST version 1.8.0 Index]