Oscope-package {Oscope} | R Documentation |
Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles of oscillating genes in an unsynchronized single cell RNA-seq experiment. The Oscope pipeline includes three modules: a sine model module to search for candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators into groups; and an extended nearest insertion module to recover the base cycle order for each oscillator group.
Package: | Oscope |
Type: | Package |
Version: | 0.99.0 |
Date: | 2015-7-27 |
License: | Artistic-2.0 |
Ning Leng
Maintainer: Ning Leng <lengning1@gmail.com>
Leng et al. Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq, accepted