shifts.load {ORFik} | R Documentation |
When you p-shift using the function shiftFootprintsByExperiment, you will get a list of shifts per library. To automatically load them, you can use this function. Defaults to loading pshifts, if you made a-sites or e-sites, change the path argument to ashifted/eshifted folder instead.
shifts.load( df, path = pasteDir(dirname(df$filepath[1]), "/pshifted/shifting_table.rds") )
df |
an ORFik |
path |
path to .rds file containing the shifts as a list, one list element per shifted bam file. |
a list of the shifts, one list element per shifted bam file.
Other pshifting:
changePointAnalysis()
,
detectRibosomeShifts()
,
shiftFootprintsByExperiment()
,
shiftFootprints()
,
shiftPlots()
df <- ORFik.template.experiment() # subset on Ribo-seq df <- df[df$libtype == "RFP",] #shiftFootprintsByExperiment(df) #shifts.load(df)