findORFs {ORFhunteR}R Documentation

Identify all variants of open reading frames in a nucleotide sequence

Description

Identify all possible variants of open reading frames in a nucleotide sequence of interest.

Usage

findORFs(x, codStart = "ATG")

Arguments

x

character string giving the nucleotide sequence of interest.

codStart

character string with type of start codon: "ATG", "GTG", "TTG" or "CTG". Default value is "ATG".

Value

matrix with start and stop positions, length and sequence of identified variants of open reading frames.

Author(s)

Vasily V. Grinev

Examples

x <- "AAAATGGCTGCGTAATGCAAAATGGCTGCGAATGCAAAATGGCTGCGAATGCCGGCACGTTGCTACGT"
orf <- findORFs(x = x, codStart = "ATG")

[Package ORFhunteR version 1.0.0 Index]