loadTrExper {ORFhunteR} | R Documentation |
Load a set of experimental transcripts.
loadTrExper(tr, genome = "BSgenome.Hsapiens.UCSC.hg38", workDir = NULL)
tr |
character string giving the name of file with experimental transcripts. Allowed file formats are "fasta", "fa", "gtf" or "gff". |
genome |
character string giving the name of BSgenome data package with full genome sequences. Default value is "BSgenome.Hsapiens.UCSC.hg38". |
workDir |
character string giving the path to and name of work directory. NULL by default that mean the current working directory. |
List of loaded transcript sequences.
Vasily V. Grinev
trans <- system.file("extdata", "Set.trans_sequences.fasta", package = "ORFhunteR") trans_seq <- loadTrExper(tr = trans)