bsseq_to_log_methy_ratio {NanoMethViz}R Documentation

Convert BSseq object to log-methylation-ratio matrix

Description

Creates a log-methylation-ratio matrix from a BSseq object that is useful for dimensionality reduction plots.

Usage

bsseq_to_log_methy_ratio(bsseq, prior_count = 2)

Arguments

bsseq

the BSseq object.

prior_count

the prior count added to avoid taking log of 0.

Value

a matrix containing log-methylation-ratios.

Examples

methy <- system.file("methy_subset.tsv.bgz", package = "NanoMethViz")
bsseq <- methy_to_bsseq(methy)
log_m_ratio <- bsseq_to_log_methy_ratio(bsseq)

[Package NanoMethViz version 1.2.0 Index]