plotVolcano {NBSplice}R Documentation

Method to obtain the Volcano Plot.

Description

plotVolcano returns a generalized volcano plot where the x-axis represents the difference between isoform's relative expression in the contrasted conditions. Isoforms are colored according to the differential splicing status of the gene where they come from.

Usage

plotVolcano(myNBRes, adjusted = TRUE, p.value = 0.05)

## S4 method for signature 'NBSpliceRes'
plotVolcano(myNBRes, adjusted = TRUE,
    p.value = 0.05)

Arguments

myNBRes

NBSpliceRes class object.

adjusted

Logical indicating if adjusted p values should be used.

p.value

Numeric value between 0 and 1 giving the required family-wise error rate or false discovery rate.

Value

A ggplot object.

Note

see full example in NBSpliceRes-class

Author(s)

Gabriela A. Merino merino.gabriela33@gmail.com and Elmer A. Fernandez efernandez@bdmg.com.ar

See Also

NBSpliceRes

Other NBSpliceRes: GetDSGenes, GetDSResults, GetGeneResults, NBSpliceRes-class, NBSpliceRes-initialize, NBSpliceRes, myDSResults, plotGeneResults, plotRatiosDisp

Examples

data(myDSResults, package="NBSplice")

g<-plotVolcano(myDSResults)
if(interactive()){
g
}

[Package NBSplice version 1.10.0 Index]