check_strand_ambiguous {MungeSumstats}R Documentation

Remove SNPs with strand-ambiguous alleles

Description

Remove SNPs with strand-ambiguous alleles

Usage

check_strand_ambiguous(sumstats_dt, path, ref_genome, strand_ambig_filter)

Arguments

sumstats_dt

data table obj of the summary statistics file for the GWAS

path

Filepath for the summary statistics file to be formatted

ref_genome

name of the reference genome used for the GWAS (GRCh37 or GRCh38). Default is GRCh37.

strand_ambig_filter

Binary Should SNPs with strand-ambiguous alleles be removed. Default is FALSE

Value

list containing sumstats_dt, the modified summary statistics data table object


[Package MungeSumstats version 1.0.1 Index]