segment2 {MinimumDistance} | R Documentation |
Methods for circular binary segmentation.
segment2(object, ...) ## S4 method for signature 'TrioSet' segment2(object, md = NULL, segmentParents = TRUE, verbose = TRUE, ...) ## S4 method for signature 'matrix' segment2(object, pos, chrom, id, featureNames, ...) ## S4 method for signature 'ff_matrix' segment2(object, pos, chrom, id, featureNames, ...) ## S4 method for signature 'arrayORff_array' segment2( object, pos, chrom, id, featureNames, segmentParents = TRUE, verbose = TRUE, ... )
object |
see |
... |
Additional arguments passed to DNAcopy's |
md |
a matrix of the minimum distance |
segmentParents |
logical. Whether to segment the log R ratios of the parents using circular binary segmentation. |
verbose |
logical. Whether to display messages that indicate progress. |
pos |
integer vector of physical position of markers in the genome |
chrom |
character or integer vector of chromosome names |
id |
character vector of trio identifiers for subsetting |
featureNames |
character vector specifying marker names for subsetting |