MPSE {MicrobiotaProcess}R Documentation

Construct a MPSE object

Description

Construct a MPSE object

Usage

MPSE(assays, colData, otutree = NULL, taxatree = NULL, refseq = NULL, ...)

Arguments

assays

A 'list' or 'SimpleList' of matrix-like elements All elements of the list must have the same dimensions, we also recommend they have names, e.g. list(Abundance=xx1, RareAbundance=xx2).

colData

An optional DataFrame describing the samples.

otutree

A treedata object of tidytree package

taxatree

A treedata object of tidytree package

refseq

A XStingSet object of Biostrings package

...

additional parameters, see also the usage of SummarizedExperiment.

Value

MPSE object


[Package MicrobiotaProcess version 1.4.4 Index]