convert_to_treedata {MicrobiotaProcess}R Documentation

convert dataframe contained hierarchical relationship or other classes to treedata class

Description

convert dataframe contained hierarchical relationship or other classes to treedata class

Usage

convert_to_treedata(data, type = "species", ...)

Arguments

data

data.frame, such like the tax_table of phyloseq.

type

character, the type of datasets, default is "species", if the dataset is not about species, #' such as dataset of kegg function, you should set it to "others".

...,

additional parameters.

Value

treedata class.

Author(s)

Shuangbin Xu

Examples

## Not run: 
  data(hmp_aerobiosis_small)
  head(taxda)
  treedat <- convert_to_treedata(taxda)

## End(Not run)

[Package MicrobiotaProcess version 1.4.4 Index]