biocrates {MatrixQCvis} | R Documentation |
The function 'biocrates' will create a 'SummarizedExperiment' from a Biocrates xlsx file. The function 'biocrates' takes as input the path to a .xlsx file (Biocrates output) and additional parameters given to the 'read.xlsx' function from the 'openxlsx' package (e.g. specifying the sheet name or index by 'sheet').
biocrates(file, sheet, ...)
file |
'character' |
sheet |
'character' or 'numeric', the name or index of the sheet to read data from |
... |
additional parameters given to 'read.xslx' |
The column "Sample Identification" has to contain unique identifiers (no duplications).
'SummarizedExperiment' object
file <- "path/to/biocrates/object" biocrates(file = file, sheet = 1)