.makeProfilePlot {MSstats} | R Documentation |
Create profile plot
.makeProfilePlot( input, is_censored, featureName, y.limdown, y.limup, x.axis.size, y.axis.size, text.size, text.angle, legend.size, dot.size.profile, ss, s, cumGroupAxis, yaxis.name, lineNameAxis, groupNametemp, dot_colors )
input |
data.table |
is_censored |
TRUE if censored values were imputed |
featureName |
for "ProfilePlot" only, "Transition" (default) means printing feature legend in transition-level; "Peptide" means printing feature legend in peptide-level; "NA" means no feature legend printing. |
x.axis.size |
size of x-axis labeling for "Run" in Profile Plot and QC Plot, and "Condition" in Condition Plot. Default is 10. |
y.axis.size |
size of y-axis labels. Default is 10. |
text.size |
size of labels represented each condition at the top of graph in Profile Plot and QC plot. Default is 4. |
text.angle |
angle of labels represented each condition at the top of graph in Profile Plot and QC plot or x-axis labeling in Condition plot. Default is 0. |
legend.size |
size of feature legend (transition-level or peptide-level) above graph in Profile Plot. Default is 7. |
dot.size.profile |
size of dots in profile plot. Default is 2. |