MSstatsPTM {MSstatsPTM}R Documentation

MSstatsPTM: A package for detecting differencially abundant post translational modifications (PTM) in shotgun mass spectrometry-bsed proteomic experiments.

Description

A set of tools for detecting differentially abundant PTMs and proteins in shotgun mass spectrometry-based proteomic experiments. The package can handle a variety of acquisition types, including label free, DDA, DIA, and TMT. The package includes tools to convert raw data from different spectral processing tools, summarize feature intensities, and fit a linear mixed effects model. Additionally the package includes functionality to plot a variety of data visualizations.

functions


[Package MSstatsPTM version 1.2.4 Index]