msgfParFragmentation-class {MSGFplus} | R Documentation |
This class defines a fragmentation type and provides methods to get correct system call parameters.
## S4 method for signature 'msgfParFragmentation' show(object) ## S4 method for signature 'msgfParFragmentation' length(x) ## S4 method for signature 'msgfParFragmentation' getMSGFpar(object) msgfParFragmentation(method)
object |
An msgfParFragmentation object |
x |
An msgfParFragmentation object |
method |
An integer specifying the method |
For length() An integer.
For getMSGFpar() A string.
For msgfParFragmentation() An msgfParFragmentation object.
show
: Short summary of msgfParFragmentation object
length
: Report the length of an msgfParFragmentation
object
getMSGFpar
: Get system
compliant
function call
method
An integer between 0 and 4 giving the selected method
Other msgfParClasses: msgfPar-class
,
msgfParChargeRange-class
,
msgfParEnzyme-class
,
msgfParInstrument-class
,
msgfParIsotopeError-class
,
msgfParLengthRange-class
,
msgfParMatches-class
,
msgfParModification-class
,
msgfParModificationList-class
,
msgfParNtt-class
,
msgfParProtocol-class
,
msgfParTda-class
,
msgfParTolerance-class
,
msgfPar
fragmentation <- msgfParFragmentation(1) fragmentation <- msgfParFragmentation('CID')