msgfParFromID {MSGFplus} | R Documentation |
This function analyses an mzIdentML file generated using MS-GF+ and returns an msgfPar object with parameters matching the ones used to generate the mzIdentML file. If the mzIdentML file does not origin from an MS-GF+ analysis it throws an error.
msgfParFromID(file)
file |
The mzIdentML file to extract the parameters from |
NOTE: At the moment the number of allowed modifications per peptide is not written to the result file and can thus not be extracted. It defaults to 2
An msgfPar object with parameters matching the input file
## Not run: parameters <- msgfParFromID('result1.mzid') ## End(Not run)