PlotiRTScore {MQmetrics}R Documentation

Score vs retention time of the iRT peptides

Description

Score vs retention time of the iRT peptides

Usage

PlotiRTScore(MQCombined, tolerance = 0.001)

Arguments

MQCombined

Object list containing all the files from the MaxQuant output. It is the result from using make_MQCombined.

tolerance

Error maximum to find the iRT peptides by m/z value. by default is 0.001.

Value

A plot for each sample showing a linear regression of the iRT peptides' retention time vs the score.

Examples

MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotiRT(MQCombined)

[Package MQmetrics version 1.0.0 Index]