PlotPCA {MQmetrics} | R Documentation |
Principal Component Analysis of the Intensity values.
PlotPCA(MQCombined, intensity_type = "Intensity", palette = "Set2")
MQCombined |
Object list containing all the files from the MaxQuant
output. It is the result from using |
intensity_type |
The type of intensity. Values: 'Intensity' or 'LFQ'. |
palette |
The palette from the Package RColorBrewer. By default is 'Set2'. Default is Intensity. |
A PCA plot of the Intesities of all the samples.
MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics") MQCombined <- make_MQCombined(MQPathCombined) PlotPCA(MQCombined)