makeSaturationPlots {MOMA} | R Documentation |
Main function to generate the summary plots of the analysis
makeSaturationPlots( momaObj, clustering.solution = NULL, important.genes = NULL, fCNV = NULL, max.events = 30 )
momaObj |
: momaObj that has already run the saturationCalculation function |
clustering.solution |
: clustering vector with sample names and cluster designations |
important.genes |
: vector of gene names to prioritize when plotting. Can be general genes of interest, oncogenes, tumor supressors etc |
fCNV |
: vector of confirmed functional CNVs if calculated. Will filter for only those CNVs |
max.events |
: maximum number of events to plot for the oncoplots |
object with both types of summary plot for each subtype
## Not run: makeSaturationPlots(momaObj, max.events = 20) ## End(Not run)