sigInteractorsDIGGIT {MOMA} | R Documentation |
Use this version in the Bayes model to rank TFs
sigInteractorsDIGGIT( corrected.scores, nes.scores, cindy, p.thresh = 0.05, cindy.only = TRUE )
corrected.scores |
A list indexed by the genomic event/gene with corresponding pvals and qvals for each TF |
nes.scores |
Matrix with tfs as columns, rows are genomic events |
cindy |
CINDy algorithm output matrix |
p.thresh |
P-value threshold (default=0.05) |
cindy.only |
Consider only CINDy validated interactions (default=TRUE) |
a list (indexed by VIPER protein) of significant genomic interactions and associated pvals over the background (null TF) model, and NES scores