MIcondition {MODA} | R Documentation |
Module detection on each condition-specific network, which is constructed from all samples but samples belonging to that condition
MIcondition(datExpr, conditionNames, ResultFolder, GeneNames, maxsize = 100, minsize = 30)
datExpr |
gene expression profile, rows are samples and columns genes, rowname should contain condition specifier |
conditionNames |
character vector, each as the condition name |
ResultFolder |
where to store the clusters |
GeneNames |
normally the gene official names to replace the colnames of datExpr |
maxsize |
the maximal nodes allowed in one module |
minsize |
the minimal nodes allowed in one module |
a numeric vector, each entry is the number of modules in condition-specific network
Dong Li, dxl466@cs.bham.ac.uk