PlotMeta {IRISFGM} | R Documentation |
This function can plot figure based on numebr total count information and this step is for the quality control. we shoud exclude extreme value in data.
PlotMeta(object, ...) .plotMeta(object = NULL) ## S4 method for signature 'IRISFGM' PlotMeta(object = NULL)
object |
input IRIS-FGM object |
... |
other arguments passed to methods |
It will generate two violin plots regarding number of RNA count and identified gene number.
x <- matrix(rnorm(100),ncol = 10) colnames(x) <- paste0("cell",1:ncol(x)) rownames(x) <- paste0("gene",1:nrow(x)) my_meta <- data.frame(row.names = paste0("cell",1:ncol(x)), cluster = c(rep("ClusterA",5),rep("ClusterB",5))) object <- CreateIRISFGMObject(x) object <- AddMeta(object, meta.info = my_meta) PlotMeta(object)