FindMarker {IRISFGM} | R Documentation |
FindMarker
Find marker based on DEsingle method Find marker based on DEsingle method
FindMarker(object, ...) .findMarker(object, SimpleResult = TRUE, FDR = 0.05) ## S4 method for signature 'IRISFGM' FindMarker(object, SimpleResult = TRUE, FDR = 0.05)
object |
input IRISFGM object |
... |
other arguments passed to methods |
SimpleResult |
marker gene only output log fold change (LFC), p-value, and adjusted p-value. |
FDR |
a number to specify the threshold of FDR, default by 0.05 |
It will return differentially expressed gene based on DEsingle method.
data(example_object) # It is an interactive function which requires user to provide the preferred cell labels. # example_object <- FindMarker(example_object)