readFast5Log {IONiseR} | R Documentation |
Basecalling procedures performed on fast5 files generally leave a
log file entry recording how far through the pipeline the file
proceeded. This function will extract this information as a
single string. It can be printed in a more readable format
using the cat
function.
readFast5Log(file)
file |
Character vector of fast5 file to be read. |
Character vector containing the log information.
NULL
if no log is found.
fast5file <- system.file('extdata', 'example.fast5', package = "IONiseR") log <- readFast5Log(fast5file) cat(log)