select_rho_partial {INDEED} | R Documentation |
A method that integrates differential expression (DE) analysis and differential network (DN) analysis to select biomarker candidates for cancer studies. select_rho_partial is the pre-processing step for INDEED partial differential analysis.
select_rho_partial(data = NULL, class_label = NULL, id = NULL, error_curve = "YES")
data |
This is a matrix of expression from all biomolecules and all samples. |
class_label |
This is a binary array with 0 for group 1 and 1 for group 2. |
id |
This is an array of biomolecule IDs. |
error_curve |
This is an option on whether a error curve plot will be provided to the user, user can choose "YES" or "NO". The default is YES. |
A list of processed data for the next step, and generates an error curve to select rho for graphical lasso.
select_rho_partial(data = Met_GU, class_label = Met_Group_GU, id = Met_name_GU, error_curve = "YES")