export.my5C {HiTC} | R Documentation |
HTCexp
object to my5C website formatExport HTCexp
object to my5C website format
export.my5C(x, file, genome="mm9", per.chromosome=FALSE)
x |
object that inherits from class |
file |
character; the prefix of the output file |
genome |
The genome version. This information is only used for the 'mat' export format. See details |
per.chromosome |
logical; export each contact maps in a different file (i.e one per chromosome pair) |
A tab-delimited matrix file is generated with the row and colnames
defined as follow as in the my5C web tool :
REV_2|mm9|chrX:98831149-98834145
N. Servant
## Not run: data(Nora_5C) ## Data binning E14.bin<-binningC(E14$chrXchrX) ## Export the new intervals definition export.my5C(E14.bin, file="E14my5C") ## End(Not run)