hippo_pca_plot {HIPPO}R Documentation

visualize each round of hippo through t-SNE

Description

visualize each round of hippo through t-SNE

Usage

hippo_pca_plot(sce, k = NA, pointsize = 0.5, pointalpha = 0.5, plottitle = "")

Arguments

sce

SincleCellExperiment object with hippo and t-SNE result in it

k

number of rounds of clustering that you'd like to see result. Default is 1 to K

pointsize

size of the point for the plot (default 0.5)

pointalpha

transparency level of points for the plot (default 0.5)

plottitle

title for the ggplot

Value

ggplot for pca in each round

Examples

data(toydata)
set.seed(20200321)
toydata = hippo(toydata, K = 10,z_threshold = 1)
hippo_pca_plot(toydata, k = 2:3)

[Package HIPPO version 1.4.0 Index]