xCell_loader {GmicR} | R Documentation |
Scales and centers data by sample/row in preparation for discretization
xCell_loader(File = NULL)
File |
the name of the text file generated by xCell that contains the cell signature scores. |
xCell signatures scaled and centered by sample. For GMIC, ImmuneScore, StromaScore, and MicroenvironmentScore are removed.
file_dir<-system.file("extdata", "IRIS_xCell_sig.txt", package = "GmicR", mustWork = TRUE) Xcell_sig<-xCell_loader(file_dir) plot(Xcell_sig$Bcells)