plotDists {GenomicInteractions}R Documentation

Plots a histogram of interaction distances for a GInteractions Object

Description

Plots a histogram of interaction distances for a GInteractions Object

Usage

plotDists(
  GIObject,
  breaks = c(0, 1000, 5000, 10000, 50000, 100000, 500000, 1000000, 2000000),
  method = "midpoint"
)

Arguments

GIObject

A GInteractions object

breaks

A numeric vector of breaks for the histogram

method

Method used for distance between anchors. Passed to calculateDistances. One of 'midpoint', 'inner', or 'outer'.

Value

A ggplot2 plot

Examples

data(hic_example_data)
plotDists(hic_example_data)

[Package GenomicInteractions version 1.26.0 Index]