BuildMST {FlowSOM} | R Documentation |
Build Minimal Spanning Tree
BuildMST(fsom, silent = FALSE, tSNE = FALSE)
fsom |
FlowSOM object, as generated by |
silent |
If |
tSNE |
If |
Add minimal spanning tree description to the FlowSOM object
FlowSOM object containing MST description
# Read from file, build self-organizing map fileName <- system.file("extdata", "68983.fcs", package="FlowSOM") flowSOM.res <- ReadInput(fileName, compensate=TRUE, transform = TRUE, scale = TRUE) flowSOM.res <- BuildSOM(flowSOM.res, colsToUse = c(9, 12, 14:18)) # Build the Minimal Spanning Tree flowSOM.res <- BuildMST(flowSOM.res)