TSCAN_Clust {FEAST} | R Documentation |
TSCAN Clustering
TSCAN_Clust(Y, k, minexpr_percent = 0.5, cvcutoff = 1, input_markers = NULL)
Y |
A expression matrix. It is recommended to use the raw count matrix. |
k |
The number of clusters. If it is not provided, k is estimated by the default method in SC3. |
minexpr_percent |
minimum expression threshold (default = 0.5). |
cvcutoff |
the cv cutoff to filter the genes (default = 1). |
input_markers |
A character vector including the featured genes. If they are not presented, SC3 will take care of this. |
the clustering labels and the featured genes.
data(Yan) k = length(unique(trueclass)) # TSCAN_res = TSCAN_Clust(Y, k=k)