setSubsetAssay {ExperimentSubset} | R Documentation |
Store a new subset assay
inside a specified subset in the
input ExperimentSubset
object.
setSubsetAssay(x, subsetName, inputMatrix, subsetAssayName) ## S4 method for signature ## 'SubsetRangedSummarizedExperiment,character,ANY,character' setSubsetAssay(x, subsetName, inputMatrix, subsetAssayName) ## S4 method for signature 'SubsetSingleCellExperiment,character,ANY,character' setSubsetAssay(x, subsetName, inputMatrix, subsetAssayName) ## S4 method for signature 'SubsetSummarizedExperiment,character,ANY,character' setSubsetAssay(x, subsetName, inputMatrix, subsetAssayName) ## S4 method for signature 'SubsetSpatialExperiment,character,ANY,character' setSubsetAssay(x, subsetName, inputMatrix, subsetAssayName) ## S4 method for signature ## 'SubsetTreeSummarizedExperiment,character,ANY,character' setSubsetAssay(x, subsetName, inputMatrix, subsetAssayName)
x |
|
subsetName |
|
inputMatrix |
|
subsetAssayName |
|
Updated ExperimentSubset
object with the new assay
stored inside the specified subset.
data(sce_chcl, package = "scds") es <- ExperimentSubset(sce_chcl) es <- createSubset(es, "subset1", rows = c(10,11,50,56,98,99,102,105,109, 200), cols = c(20,21,40,45,90,99,100,123,166,299), parentAssay = "counts") counts1p <- assay(es, "subset1") counts1p[,] <- counts1p[,] + 1 es <- setSubsetAssay(es, "subset1", counts1p, "scaledSubset1") es