createAB {ExiMiR} | R Documentation |
This function creates an AffyBatch
object from a limma
object (RGList
, EListRaw
, MAList
) or from any appropriate list
object.
createAB(object, verbose=TRUE, ref.channel="R", genes.block=NULL, genes.row=NULL, genes.col=NULL, genes.id=NULL, genes.name=NULL, galname=NULL, env.overwrite=TRUE, ...)
object |
An appropriate |
verbose |
Logical. The default value is |
genes.block |
Optional character vector in case the platform is neither ImaGene, Exiqon nor Agilent. The name of the column
in the |
genes.row |
Optional character vector in case the platform is neither ImaGene, Exiqon nor Agilent. The name of the column
in the |
genes.col |
Optional character vector in case the platform is neither ImaGene, Exiqon nor Agilent. The name of the column
in the |
genes.id |
Optional character vector in case the platform is neither ImaGene, Exiqon nor Agilent. The name of the column
in the |
genes.name |
Optional character vector in case the platform is neither ImaGene, Exiqon nor Agilent. The name of the column
in the |
ref.channel |
Character vector. The value of the reference channel for two-color arrays ('R' or 'G') |
galname |
Character vector. The default value is |
env.overwrite |
Logical. The default value is |
... |
Any additional argument that can be given to the |
See accompanying vignette.
An AffyBatch
object containing the raw expression data.
Sylvain Gubian, Alain Sewer, PMP SA
ReadExi
,
make.gal.env
.