merge_two_expfiles {EWCE} | R Documentation |
merge_two_expfiles
Used to combine two single cell type datasets
merge_two_expfiles(exp1, exp2, annot1, annot2, name1 = "", name2 = "")
exp1 |
Numerical expression matrix for dataset1 with row for each gene and column for each cell. Row names are MGI/HGNC gene symbols. Column names are cell IDs which can be cross referenced against the annot data frame. |
exp2 |
Numerical expression matrix for dataset2 with row for each gene and column for each cell. Row names are MGI/HGNC gene symbols. Column names are cell IDs which can be cross referenced against the annot data frame. |
annot1 |
Annotation data frame for dataset1 which contains three columns at least: cell_id, level1class and level2class |
annot2 |
Annotation data frame for dataset2 which contains three columns at least: cell_id, level1class and level2class |
name1 |
Name used to refer to dataset 1. Leave blank if it's already a merged dataset. |
name2 |
Name used to refer to dataset 2. Leave blank if it's already a merged dataset. |
List containing merged exp and annot
# See the EWCE vignette for use case explanation