calculate_multifunc {EGAD} | R Documentation |
The function performs multifunctionality analysis ([1]) for a set of annotated genes and creates a rank based optimallist. For annotations use an ontology that is large enough to serve as a prior (e.g. GO, Phenocarta).
calculate_multifunc(genes.labels)
genes.labels |
Annotation matrix |
gene.mfs Returns matrix with evaluation of gene function prediction by given labels:
genes.labels <- matrix( sample(c(0,1), 100, replace=TRUE),ncol=10,nrow=10) rownames(genes.labels) = paste('gene', 1:10, sep='') colnames(genes.labels) = paste('label', 1:10, sep='') mf <- calculate_multifunc(genes.labels)