plot_all {DEP} | R Documentation |
plot_all
visualizes the results of the differential protein
expression analysis in different types of plots. These are (1)
volcano plots, (2) heatmaps, (3) single protein plots, (4) frequency plots
and/or (5) comparison plots.
plot_all(dep, plots = c("volcano", "heatmap", "single", "freq", "comparison"))
dep |
SummarizedExperiment,
Data object which has been generated by |
plots |
"volcano", "heatmap", "single", "freq" and/or "comparison", |
Pdfs containg the desired plots.
# Load datasets data <- UbiLength exp_design <- UbiLength_ExpDesign # Import and process data se <- import_MaxQuant(data, exp_design) processed <- process(se) # Differential protein expression analysis dep <- analyze_dep(processed, "control", "Ctrl") ## Not run: # Plot all plots plot_all(dep) ## End(Not run)