degDefault {DEGreport} | R Documentation |
It can accept a list of new padj values matching the
same dimmensions than the current vector.
It can calculate the lfdr
based on fdrtool::fdrtool function.
degDefault(object) degCorrect(object, fdr) ## S4 method for signature 'DEGSet' degDefault(object) ## S4 method for signature 'DEGSet' degCorrect(object, fdr)
object |
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fdr |
It can be |
Lorena Pantano
Lorena Pantano
library(DESeq2) library(dplyr) dds <- makeExampleDESeqDataSet(betaSD=1) colData(dds)[["treatment"]] <- sample(colData(dds)[["condition"]], 12) design(dds) <- ~ condition + treatment dds <- DESeq(dds) res <- degComps(dds, contrast = list("treatment_B_vs_A")) # library(fdrtools); degCorrect(res, fdr = "lfdr-stat")