degMean {DEGreport} | R Documentation |
This function plot the p-values distribution colored by the quantiles of the average count data.
degMean(pvalues, counts)
pvalues |
pvalues of DEG analysis. |
counts |
Matrix with counts for each samples and each gene. row number should be the same length than pvalues vector. |
ggplot2 object
data(humanGender) library(DESeq2) idx <- c(1:10, 75:85) dds <- DESeqDataSetFromMatrix(assays(humanGender)[[1]][1:1000, idx], colData(humanGender)[idx,], design=~group) dds <- DESeq(dds) res <- results(dds) degMean(res[, 4], counts(dds))