calc_derivedasm {DAMEfinder}R Documentation

Calculate SNP-based ASM

Description

Combines all the GRangeslist generated in extract_bams into a RangedSummarizedExperiment object, and calculates SNP-based allele-specific methylation.

Usage

calc_derivedasm(sampleList, cores = 1, verbose = TRUE)

Arguments

sampleList

List of samples returned from extract_bams.

cores

Number of cores to thread.

verbose

If the function should be verbose.

Value

RangedSummarizedExperiment containing in assays:

Examples

data(extractbams_output)
derASM <- calc_derivedasm(extractbams_output[c(1,2)], cores = 1, 
   verbose = FALSE)


[Package DAMEfinder version 1.4.0 Index]