splitReads {DAMEfinder}R Documentation

Divide read names by allele

Description

Takes a GenomicAlignments object and returns a list of read names dividied by allele.

Usage

splitReads(alns, v, snp)

Arguments

alns

GenomicAlignments object.

v

Nucleotide of reference (or alternative) allele.

snp

GRanges object containing SNP location.

Value

A named list of vectors, each vector containing read names for each allele.


[Package DAMEfinder version 1.4.0 Index]