plotPieTree {CytoTree} | R Documentation |
plot MST pie of CYT
plotPieTree( object, cex.size = 2, size.by.cell.number = TRUE, as.tree = FALSE, root.id = NULL, show.node.name = FALSE )
object |
an CYT object |
cex.size |
numeric. size cex of the dot |
size.by.cell.number |
logical. Whether to size node by cell number |
as.tree |
logical. Whether to show node as tree |
root.id |
numeric. Root id of the tree, if as.tree is TRUE |
show.node.name |
logical. whether to show node name |
ggplot2 figure
cyt.file <- system.file("extdata/cyt.rds", package = "CytoTree") cyt <- readRDS(file = cyt.file) # Runs only have two or more stages plotPieTree(cyt, cex.size = 1, size.by.cell.number = TRUE)