DA_pairwise {ChromSCape} | R Documentation |
Run differential analysis in Pairwise mode
DA_pairwise( affectation, nclust, counts, method, feature, block, progress = NULL, BPPARAM = BiocParallel::bpparam() )
affectation |
An annotation data.frame with cell_cluster and cell_id columns |
nclust |
Number of clusters |
counts |
Count matrix |
method |
DA method, Wilcoxon or edgeR |
feature |
Feature data.frame |
block |
Blocking feature |
progress |
A shiny Progress instance to display progress bar. |
BPPARAM |
BPPARAM object for multiprocessing. See bpparam for more informations. Will take the default BPPARAM set in your R session. |
A list of results, groups compared and references