DA_pairwise {ChromSCape}R Documentation

Run differential analysis in Pairwise mode

Description

Run differential analysis in Pairwise mode

Usage

DA_pairwise(
  affectation,
  nclust,
  counts,
  method,
  feature,
  block,
  progress = NULL,
  BPPARAM = BiocParallel::bpparam()
)

Arguments

affectation

An annotation data.frame with cell_cluster and cell_id columns

nclust

Number of clusters

counts

Count matrix

method

DA method, Wilcoxon or edgeR

feature

Feature data.frame

block

Blocking feature

progress

A shiny Progress instance to display progress bar.

BPPARAM

BPPARAM object for multiprocessing. See bpparam for more informations. Will take the default BPPARAM set in your R session.

Value

A list of results, groups compared and references


[Package ChromSCape version 1.2.62 Index]