call_macs2_merge_peaks {ChromSCape} | R Documentation |
Calling MACS2 peak caller and merging resulting peaks
call_macs2_merge_peaks( affectation, odir, p.value, format = c("scBED", "BAM")[1], ref, peak_distance_to_merge )
affectation |
Annotation data.frame with cell cluster and cell id information |
odir |
Output directory to write MACS2 output |
p.value |
P value to detect peaks, passed to MACS2 |
format |
File format, either "BAM" or "scBED" |
ref |
Reference genome to get chromosome information from. |
peak_distance_to_merge |
Distance to merge peaks |
A list of merged GRanges peaks