subsample_scExp {ChromSCape} | R Documentation |
Randomly sample x cells from each sample in a SingleCellExperiment to return a subsampled SingleCellExperiment with all samples having maximum n cells. If n is higher than the number of cell in a sample, this sample will not be subsampled.
subsample_scExp(scExp, n_cells = 500)
scExp |
A SingleCellExperiment |
n_cells |
An integer number of cells to subsample for each sample (500) |
A subsampled SingleCellExperiment
scExp = create_scExp(create_scDataset_raw()$mat,create_scDataset_raw()$annot) scExp_sub = subsample_scExp(scExp,50) ## Not run: num_cell_scExp(scExp_sub)