oligoFrequency {ChIPpeakAnno}R Documentation

get the oligonucleotide frequency

Description

Prepare the oligonucleotide frequency for given Markov order.

Usage

oligoFrequency(sequence, MarkovOrder = 3L, last = 1e+06)

Arguments

sequence

The sequences packaged in DNAStringSet, DNAString object or output of function getAllPeakSequence.

MarkovOrder

Markov order.

last

The sequence size to be analyzed.

Value

A numeric vector.

Author(s)

Jianhong Ou

See Also

See Also as oligoSummary

Examples

    library(seqinr)
    library(Biostrings)
    oligoFrequency(DNAString("AATTCGACGTACAGATGACTAGACT"))


[Package ChIPpeakAnno version 3.26.4 Index]