ChIPSeqSpikeDatasetList-class {ChIPSeqSpike} | R Documentation |
Class containing a list of ChIPSeqSpikeDataset objects
datasetList: A list of ChIPSeqSpikeDataset objects
ChIPSeqSpikeDatasetList(dataset_list, verbose)
A properly formatted list of information needed to create the object (see details).
Indicate if processing messages should be output.
getBigWigFile
Returns a vector of all bigWig paths corresponding to all files specified in info.csv
x[[i]]
Get the ChIPSeqSpikeDataset object at index i
x[[i]] <- value
Set value
to ChIPSeqSpikeDatasetList i
This class enables to process datasets containing different input files. It will creates a list of ChIPSeqSpikeDataset objects, each of them containing a different input.
The above indicated constructor should not be used directly. One would rather create the object by calling the "meta-constructor" spikeDataset function which takes a info.csv file as input. spikeDataset function formats properly the different information into a dataset_list which is submitted to the ChIPSeqSpikeDatasetList constructor.
Nicolas Descostes
ChIPSeqSpikeDataset-class
spikeDataset
spikeSummary
getRatio
info_file_csv <- system.file("extdata/info.csv", package="ChIPSeqSpike") bam_path <- system.file(c("extdata/bam_files"), package="ChIPSeqSpike") bigwig_path <- system.file(c("extdata/bigwig_files"), package="ChIPSeqSpike") csds <- spikeDataset(infoFile = info_file_csv, bamPath = bam_path, bigWigPath = bigwig_path) is(csds) csds