ChIPSeqSpikeDatasetListBoost-class {ChIPSeqSpike} | R Documentation |
Class containing a list of ChIPSeqSpikeDatasetBoost objects
datasetList: A list of ChIPSeqSpikeDatasetBoost objects
ChIPSeqSpikeDatasetListBoost(dataset_list, verbose)
A properly formatted list of information needed to create the object (see details).
Indicate if processing messages should be output.
exportBigWigs
Output all bigwig files corresponding to the previously performed transformations. The list of bigwig files is given in info.csv (see details).
x[[i]]
Get the ChIPSeqSpikeDatasetBoost object at index i
This class enables to process datasets containing different input files in boost mode. It will creates a list of ChIPSeqSpikeDatasetBoost objects, each of them containing a different input.
The above indicated constructor should not be used directly. One would rather create the object by calling the "meta-constructor" spikeDataset function, which takes a info.csv file as input, setting boost = TRUE. spikeDataset function formats properly the different information into a dataset_list which is submitted to the ChIPSeqSpikeDatasetListBoost constructor.
Nicolas Descostes
ChIPSeqSpikeDatasetBoost-class
spikeDataset
spikeSummary
getRatio
info_file_csv <- system.file("extdata/info.csv", package="ChIPSeqSpike") bam_path <- system.file(c("extdata/bam_files"), package="ChIPSeqSpike") bigwig_path <- system.file(c("extdata/bigwig_files"), package="ChIPSeqSpike") if(.Platform$OS.type != 'windows') { csds <- spikeDataset(infoFile = info_file_csv, bamPath = bam_path, bigWigPath = bigwig_path, boost = TRUE) is(csds) csds }