boxFluo {CONFESS} | R Documentation |
It generates the density plots of the uncorrected and corrected cell fluorescence signals.
boxFluo(data, transformation, reference, legends, batchnames, image.type, savePlot)
data |
List. A list with the fluorescence data. Typically, the output of createFluo(). |
reference |
Integer. The run number to be used as baseline for the run correction. |
legends |
Character vector. Puts the "uncorrected" or "corrected" legends on the signal density plots. |
batchnames |
original run name. |
image.type |
Character string. A triplet of IDs to characterize the type of images under study. |
savePlot |
Character. A switch to generate the density plots. |
transform |
Character string. The type of transformation to be performed. One of "bc" (Box-Cox), "log", "log10" or "asinh". |
The density plots of the fluorescence data