identifyPolymorphicRegion {CNVrd2} | R Documentation |
Using quantile values to identify polymorphic regions.
identifyPolymorphicRegion(Object, ...)
Object |
An object of class CNVrd2 |
... |
Optional arguments. |
putativeBoundary |
resultant boundaries based on quantile thresholds. |
subRegionMatrix |
segmentation-score matrix of sub-regions derived from the segmentation process. |
subRegion |
sub-regions derived from the segmentation process. |
mQuantile |
matrix of quantile values. |
mSD |
data frame including subregions and their standard deviations. |
Vst |
data frame of Vst between populations if VstTest = TRUE. |
SSofPolymorphicRegions |
segmentation scores of polymorphic regions. |
Users can choose various quantile values and adjust different thresholds to obtain polymorphic regions.
To visualize more clearly polymorphic regions user can use the method plotPolymorphicRegion with the option typePlot="SD".
Hoang Tan Nguyen, Tony R Merriman and MA Black. hoangtannguyenvn@gmail.com
## Not run: fcgr3PolymorphicRegion <- identifyPolymorphicRegion(Object = objectCNVrd2, segmentObject = resultSegment, thresholdForPolymorphicRegions = c(0.75, 0.25), plotLegend = FALSE) ## End(Not run)