retrieve peaks and ploidy {CNAnorm} | R Documentation |
sugg.peaks
returns the location of peaks before normalization as
suggested by peakPloidy
.
sugg.ploidy
returns the ploidy of the peaks as suggested by
peakPloidy
.
valid.peaks
returns the location of peaks before normalization as
validated after calling method "validation"
valid.ploidy
returns the validated ploidy of the peaks as validated
after calling method "validation"
sugg.peaks(object) sugg.ploidy(object) valid.peaks(object) valid.ploidy(object)
object |
An object of Class |
A numeric vector
Stefano Berri <s.berri@leeds.ac.uk>
gcNorm
, CNAnorm-class
, DNAcopy
data(CN) # see peakPloidy documentation to know how object CN is created plot(sugg.ploidy(CN), sugg.peaks(CN))