elementset_funs {BiocSet} | R Documentation |
BiocSet
objectAll of the major methods applied to a BiocSet
object can
be explicitly applied to the elementset tibble. These functions bypass
the need to use the es_activate
function by indicating what
function should be used on the elementset tibble.
filter_elementset(.data, ...) select_elementset(.data, ...) mutate_elementset(.data, ...) summarise_elementset(.data, ...) arrange_elementset(.data, ...) left_join_elementset(.data, ...) tibble_from_elementset(.data) data.frame_from_elementset(.data)
.data |
A |
... |
Additional arguments passed to the function. |
A BiocSet
object.
For tibble_from_elementset
, a tibble.
For data.frame_from_elementset
, a data.frame.
es <- BiocSet(set1 = letters, set2 = LETTERS) filter_elementset(es, element == "a" | element == "A") es %>% select_elementset(element) es %>% mutate_elementset(pval = rnorm(1:52)) es %>% summarise_elementset(n = n()) es %>% arrange_elementset(desc(element)) tbl <- tibble(x = 5:6, y = c("set1", "set2")) es %>% left_join_elementset(tbl, by = c(set = "y")) tibble_from_elementset(es) data.frame_from_elementset(es)