plotSmoothMeth {BiSeq} | R Documentation |
This function plots the smoothed methylation data as lines for a given region and all given samples. It is also possible to average the data for groups of samples.
plotSmoothMeth(object.rel, region, groups, group.average, ...)
object.rel |
A |
region |
A |
groups |
OPTIONAL. A |
group.average |
OPTIONAL. A |
... |
Other graphical parameters passed to the |
Katja Hebestreit
plotMeth
, plot
data(predictedMeth) data(DMRs) plotSmoothMeth(object.rel = predictedMeth, region = DMRs[3] + 200, groups = colData(predictedMeth)$group, col=c("magenta", "blue")) legend("topright", lty=1, legend=levels(colData(predictedMeth)$group), col=c("magenta", "blue"))