qualityControl {AneuFinder}R Documentation

Quality control measures for binned read counts

Description

Calculate various quality control measures on binned read counts.

Usage

qc.spikiness(counts)

qc.entropy(counts)

qc.bhattacharyya(hmm)

qc.sos(hmm)

Arguments

counts

A vector of binned read counts.

hmm

An aneuHMM object.

Details

The Shannon entropy is defined as S = - sum( n * log(n) ), where n = counts/sum(counts).

Spikyness is defined as K = sum(abs(diff(counts))) / sum(counts).

Value

A numeric.

Functions

Author(s)

Aaron Taudt


[Package AneuFinder version 1.20.0 Index]