getDefaultMapBiasExpMean {AllelicImbalance} | R Documentation |
an allele frequency array
getDefaultMapBiasExpMean(alleleCountList, ...) getDefaultMapBiasExpMean3D(alleleCountList, ...) ## S4 method for signature 'list' getDefaultMapBiasExpMean(alleleCountList) ## S4 method for signature 'ANY' getDefaultMapBiasExpMean3D(alleleCountList)
alleleCountList |
A |
... |
parameters to pass on |
This function will assume there is no bias that comes from the mapping of reads, and therefore create a matrix with expected frequency of 0.5 for each allele.
getDefaultMapBiasExpMean
returns a matrix with a default
expected mean of 0.5 for every element.
Jesper R. Gadin, Lasse Folkersen
#load example data data(ASEset) #access SnpAfList alleleCountList <- alleleCounts(ASEset) #get default map bias exp mean matExpMean <- getDefaultMapBiasExpMean(alleleCountList)