getReads {ALDEx2} | R Documentation |
Returns the count table used as input for analysis, for
aldex.clr
object. Note this count table has features
that are 0 in all samples removed, and a uniform prior of
0.5 is applied.
getReads(.object)
.object |
A |
Returns the count table.Note this count table has features that are 0 in all samples removed, and a uniform prior of 0.5 is applied.
A data frame representing the count table used as input for analysis.
aldex.clr
data(selex) #subset for efficiency selex <- selex[1201:1600,] conds <- c(rep("NS", 7), rep("S", 7)) x <- aldex.clr(selex, conds, mc.samples = 2, denom = "all", verbose = FALSE) reads <- getReads(x)