Access and analyze DNA methylation database compilations
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Documentation for package ‘recountmethylation’ version 1.2.3
Help Pages
| data_mdpost | Retrieve all available sample metadata from an HDF5 database. |
| gds_idat2rg | Get IDATs as an RGChannelSet from GEO/GDS |
| gds_idatquery | Query and download IDATs from GEO Data Sets |
| getdb | Access database files. |
| getdb_h5se_gm | Access database files. |
| getdb_h5se_gr | Access database files. |
| getdb_h5se_rg | Access database files. |
| getdb_h5se_test | Access database files. |
| getdb_h5_rg | Access database files. |
| getdb_h5_test | Access database files. |
| getrg | Query and store data from h5 file signal tables |
| get_rmdl | Get DNAm assay data. |
| get_servermatrix | get_servermatrix |
| hread | Query and store an HDF5 dataset on row and column indices. |
| matchds_1to2 | Match two datasets on rows and columns |
| rgse | Form an RGChannelSet from a list containing signal data matrices |
| servermatrix | servermatrix |
| smfilt | smfilt |