Seamless visualization of complex genomic variations in GMOs and edited cell lines


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Documentation for package ‘gmoviz’ version 1.4.0

Help Pages

bright_colours_opaque gmoviz colour sets
bright_colours_transparent gmoviz colour sets
colourSets gmoviz colour sets
drawFeatureTrack Add a 'feature' track to an existing plot
drawLinegraphTrack Add a line graph track to an existing plot
drawScatterplotTrack Add a scatterplot track to an existing plot
featureDiagram Display 'features' of interest in a diagram
getCoverage Import coverage data from .bam file
getFeatures Generate a GRanges containing 'features' from .gff files
getIdeogramData Import transgenic genome data from .bam or .fasta file
getLabels Generate a GRanges of labels from .gff files
gmovizInitialise Initialise the layout of the circular plot
gmovizPlot Generate an entire circular plot
insertionDiagram Display number of copies of an insertion
makeLegends Add a legend
multipleInsertionDiagram Display multiple insertion events around a genome
nice_colours gmoviz colour sets
pastel_colours gmoviz colour sets
rich_colours gmoviz colour sets