Package to decouple gene sets from statistics


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Documentation for package ‘decoupleR’ version 1.0.0

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convert_f_defaults Rename columns and add defaults values if column not present
convert_to_ Convert a network to run under the method of interest.
convert_to_gsva Convert a network to run under the method of interest.
convert_to_mean Convert a network to run under the method of interest.
convert_to_ora Convert a network to run under the method of interest.
convert_to_pscira Convert a network to run under the method of interest.
convert_to_scira Convert a network to run under the method of interest.
convert_to_viper Convert a network to run under the method of interest.
decouple Evaluate multiple statistics with same input data
filter_regulons Filter network by size of regulons
run_gsva GSVA wrapper
run_mean Weighted mean
run_ora Over Representation Analysis - Fisher Exact Test
run_pscira PSCIRA (Permutation Single Cell Inference of Regulatory Activity)
run_scira SCIRA (Single Cell Inference of Regulatory Activity)
run_viper VIPER wrapper