Detection of Differentially Methylated Regions


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Documentation for package ‘DMRScan’ version 1.14.0

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DMRScan_package-package DMRScan: An R-package for identification of Differentially Metylated Regions
dmrscan DMR Scan function
DMRScan.methylationData DMRScan
DMRScan.phenotypes DMRScan
DMRScan_package DMRScan: An R-package for identification of Differentially Metylated Regions
estimateThreshold EstimateWindowThresholds
estimateWindowThreshold EstimateWindowThresholds
makeCpGgenes Cluster
makeCpGregions Cluster
manyWindowSizeScanner Method Fixed window size scan for a sequence of window sizes
manyWindowSizeScanner-method Method Fixed window size scan for a sequence of window sizes
oneWindowSizeScanner Method Fixed window size scan for one window size
oneWindowSizeScanner-method Method Fixed window size scan for one window size
Rt Method Fixed window size scan for one window size
Rt-method Method Fixed window size scan for one window size
St Method Fixed window size scan for a sequence of window sizes